PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027088908.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 397aa MW: 43258.9 Da PI: 8.5951

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027088908.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.6	7.6e-12	11	36	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rtG C+yG++C+F+H+p XP_027088908.1 11 GEPDCSYYIRTGLCRYGATCRFNHPP 36 6899********************97 PP
2	zf-CCCH	39.9	6.9e-13	56	81	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++CkF+H++ XP_027088908.1 56 GQPECQYYLKTGTCKFGATCKFHHPR 81 5799********************96 PP
3	zf-CCCH	36.2	1e-11	105	127	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C +++rtG+Ck+G++CkF+H++ XP_027088908.1 105 ECAYYLRTGHCKFGSTCKFHHPQ 127 7********************97 PP
4	zf-CCCH	38.8	1.5e-12	259	285	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ CkF+H++ XP_027088908.1 259 PGQPECQFYMKTGDCKFGAVCKFHHPR 285 5789*********************96 PP
5	zf-CCCH	40.3	5.2e-13	305	331	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ XP_027088908.1 305 PGEPLCIFYSRYGICKFGPSCKFDHPM 331 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence
MEAGTYPVRE GEPDCSYYIR TGLCRYGATC RFNHPPNRKL AIATARMRGE YPERMGQPEC 60 QYYLKTGTCK FGATCKFHHP REKAGIAGRV TLNALGYPLR PNEIECAYYL RTGHCKFGST 120 CKFHHPQPAN MMVSVRGSPV YPSVHSPTNP GQLSYPLSRA SFIPNPRWQG PSSYAPVLVP 180 QSMVSVSGWN AYSGQLGSGS SAESQQQTAG NDQTHGMVGQ SEAANVGSQG IHSSYSSSSL 240 PIGYYALQLQ RETVFPERPG QPECQFYMKT GDCKFGAVCK FHHPRERILP APDCGLSPIG 300 LPLRPGEPLC IFYSRYGICK FGPSCKFDHP MGVFTYNVSS SSTEPPTVRR LLGSSSGTGP 360 LTLASEGLVE ASSTKSRLLP LSEARKPSGD TSIDPEE

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence

MEAGTYPVRE GEPDCSYYIR TGLCRYGATC RFNHPPNRKL AIATARMRGE YPERMGQPEC  60
QYYLKTGTCK FGATCKFHHP REKAGIAGRV TLNALGYPLR PNEIECAYYL RTGHCKFGST  120
CKFHHPQPAN MMVSVRGSPV YPSVHSPTNP GQLSYPLSRA SFIPNPRWQG PSSYAPVLVP  180
QSMVSVSGWN AYSGQLGSGS SAESQQQTAG NDQTHGMVGQ SEAANVGSQG IHSSYSSSSL  240
PIGYYALQLQ RETVFPERPG QPECQFYMKT GDCKFGAVCK FHHPRERILP APDCGLSPIG  300
LPLRPGEPLC IFYSRYGICK FGPSCKFDHP MGVFTYNVSS SSTEPPTVRR LLGSSSGTGP  360
LTLASEGLVE ASSTKSRLLP LSEARKPSGD TSIDPEE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-171	C3H family protein