PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027089261.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 259aa    MW: 28884.1 Da    PI: 5.624
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027089261.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.4e-163680147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+eE++++++a k++G   W+ I +++g ++t+ q++s+ qk+
   XP_027089261.1 36 REKWTEEEHQRFLEALKLYGRA-WRQIEEHVG-TKTAIQIRSHAQKF 80
                     789*****************88.*********.************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    
MRAHLETTAA QTQALTEMGN GYALKVRKPY TIKKQREKWT EEEHQRFLEA LKLYGRAWRQ  60
IEEHVGTKTA IQIRSHAQKF FAKVARDSNE CEGSLNPIEI PPPRPKKKPA HPYPRKVTDV  120
TKTTLDDPHQ PEQAPPFKRS GEERNSRSPT SVLSALGSDT SGSPSSEPQR SHLSPVSYTT  180
DDAHSAIVQL TENDNECMTS DSSVEEEKEY GHAILLATSA TQDDESAMEL DLLTFGRACP  240
AEDPAFEQAP AKLSCLEEL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.14e-41MYB_related family protein