PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027089364.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MIKC_MADS
Protein Properties Length: 214aa    MW: 24406.1 Da    PI: 9.8992
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027089364.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.16.2e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krie+ + rqvtfskRr+g+lKKA+ELSvLCdaeva+iifs++gklye+ss
  XP_027089364.1  9 KRIEDATTRQVTFSKRRKGLLKKAFELSVLCDAEVALIIFSPSGKLYEFSS 59
                    79***********************************************96 PP
2K-box59.81.2e-2081158885
           K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                     + + +  ++ ++e+a L+k+ie L+++ R+llG++L+s s+ eLqq+e+qLeksl+ iRs+K  l++e i++l++  k
  XP_027089364.1  81 QMDLESLQHFEEEVAILRKKIELLEETTRKLLGDGLDSSSIGELQQVERQLEKSLSIIRSRKILLFCERINQLKEEVK 158
                     356677899****************************************************************98665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    
MARGKTQIKR IEDATTRQVT FSKRRKGLLK KAFELSVLCD AEVALIIFSP SGKLYEFSSS  60
SATSTIERYQ KSIKNRPTSK QMDLESLQHF EEEVAILRKK IELLEETTRK LLGDGLDSSS  120
IGELQQVERQ LEKSLSIIRS RKILLFCERI NQLKEEVKYA FEASGVAYSF IHILVRNKVY  180
SFHANWHGVN ILCISVSNSG ENSQKEKCGI TRNV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.13e-64MIKC_MADS family protein