PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027089367.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MIKC_MADS

Protein Properties

Length: 213aa MW: 24784.4 Da PI: 6.9451

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027089367.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	94.3	5.4e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++ rqvtfskRr+g+lKKA+ELSvLCdaeva+i+fs++gkl+e+ss XP_027089367.1 9 KRIENSTSRQVTFSKRRKGLLKKAFELSVLCDAEVALIVFSPSGKLFEFSS 59 79***********************************************96 PP
2	K-box	68.2	2.8e-23	91	182	9	100
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++ ++ + ++e+a L+k+ie L++++R++lG++L+s s+ eL+q+e+qLeksl+ iRs+K + +e+i++l++ ek l++en +Lr+k+ee XP_027089367.1 91 ETDLHTPHFEEEVAILRKKIELLEETKRKFLGDGLDSSSIDELEQIEHQLEKSLRIIRSRKILFSCEEINQLKEEEKILRRENAELREKYEE 182 4566788999*******************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence
MVRGKTQIKR IENSTSRQVT FSKRRKGLLK KAFELSVLCD AEVALIVFSP SGKLFEFSSS 60 SAASTTERYR KCIKNLLRPS KQMDVEHLQS ETDLHTPHFE EEVAILRKKI ELLEETKRKF 120 LGDGLDSSSI DELEQIEHQL EKSLRIIRSR KILFSCEEIN QLKEEEKILR RENAELREKY 180 EERQLELSIG QQFLSLEQGK EVETQLFIGL PDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	2e-59	MIKC_MADS family protein