PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027089883.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 279aa    MW: 32176.7 Da    PI: 5.1111
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027089883.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.72.3e-192373656
                    S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    ++  +q+++Le+ Fe +++++ e++ +LA++lgL+ rqV +WFqNrRa++k
  XP_027089883.1 23 RLRIDQVQALERIFEVDNKLDPERKIKLAQELGLQPRQVAIWFQNRRARWK 73
                    45668*********************************************9 PP
2HD-ZIP_I/II121.93.2e-3920110292
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     kk+rl  +qv++LE+ Fe ++kL+perK +la+eLglqprqva+WFqnrRAR+ktkqlE+dy+ Lk++y+al+ + +++e+e+e+L +el+
  XP_027089883.1  20 KKKRLRIDQVQALERIFEVDNKLDPERKIKLAQELGLQPRQVAIWFQNRRARWKTKQLERDYHLLKANYEALQLNYSKVEQEKESLVAELR 110
                     9*************************************************************************************99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    
MLDGLDDEDS IEEYNCSNGK KKRLRIDQVQ ALERIFEVDN KLDPERKIKL AQELGLQPRQ  60
VAIWFQNRRA RWKTKQLERD YHLLKANYEA LQLNYSKVEQ EKESLVAELR GLREKLGEDN  120
TETNHSIEKV ATLQSSPKMA SEKCNDSSEF GPTHANHEVY TNLHLSSETK RILDLKDGLS  180
DSDSSGVLNE DSNNLNVQPL VSKLSSCNPT FNGLDQYAFS LSAPVYHPHL LDSRVKDYQQ  240
QFMKMQDQNH SSYADDSCNI FSVDQAPPLY WYFSDPRNQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12049KKKRLRIDQVQALERIFEVDNKLDPERKIK
26876RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65310.22e-44HD-ZIP family protein