PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027090043.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

SRS

Protein Properties

Length: 364aa MW: 38840.6 Da PI: 8.0049

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027090043.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	224	2.9e-69	121	282	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.........aeaaskrkrel...kskkqsa 85 gt++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrerqqql+a+++++++++ + +++kr re+ +s+ XP_027090043.1 121 GGTMNCQDCGNQAKKDCPHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLSALQTHQQQQQqnqqqlsliRGDNPKRLRENpggGGGGSSS 215 689*************************************************99988887776678889888888888888887666677888 PP DUF702 86 lsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 l++t+l++++s l++ ++P+ev+ +a frcvrvs++dd+ee++aYqtav+igGhvfkGiLydqGle+ XP_027090043.1 216 LACTRLPTSTS--GLDVGNFPAEVNYPATFRCVRVSAMDDAEEQYAYQTAVNIGGHVFKGILYDQGLES 282 99999988865..59999**********************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MSGFFSLGGG KEQEQQEQQD TTNNSSFYLF KNEEIYNKGF ELWQQYYQLH QQRIQHHHHH 60 QVVGQDVDFS VGPSRRIISS GSGGSGSIGD DSSYRSAGFR VMRHGGGGGT GSGSSSGGGG 120 GGTMNCQDCG NQAKKDCPHM RCRTCCKSRG FQCQTHVKST WVPAAKRRER QQQLSALQTH 180 QQQQQQNQQQ LSLIRGDNPK RLRENPGGGG GGSSSLACTR LPTSTSGLDV GNFPAEVNYP 240 ATFRCVRVSA MDDAEEQYAY QTAVNIGGHV FKGILYDQGL ESRYATSGGA GAGEASSGGG 300 GGHGHHHDHD PQPPLNLIGT AAAATANAAV TSTNPALTML DPSIYPTPLS AFMAGTQFFP 360 PPRS

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MSGFFSLGGG KEQEQQEQQD TTNNSSFYLF KNEEIYNKGF ELWQQYYQLH QQRIQHHHHH  60
QVVGQDVDFS VGPSRRIISS GSGGSGSIGD DSSYRSAGFR VMRHGGGGGT GSGSSSGGGG  120
GGTMNCQDCG NQAKKDCPHM RCRTCCKSRG FQCQTHVKST WVPAAKRRER QQQLSALQTH  180
QQQQQQNQQQ LSLIRGDNPK RLRENPGGGG GGSSSLACTR LPTSTSGLDV GNFPAEVNYP  240
ATFRCVRVSA MDDAEEQYAY QTAVNIGGHV FKGILYDQGL ESRYATSGGA GAGEASSGGG  300
GGHGHHHDHD PQPPLNLIGT AAAATANAAV TSTNPALTML DPSIYPTPLS AFMAGTQFFP  360
PPRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	8e-64	SRS family protein