PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027090113.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 259aa    MW: 27428.4 Da    PI: 8.0902
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027090113.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00064110132123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ C+k F +   L  H  +H
  XP_027090113.1 110 YKCSVCNKAFGSYQALGXHKASH 132
                     9***************9999888 PP
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    
MALEALNSPT TPTPSFPFDN PSLRHLTEPW AKGKRSKRPR SLDHPQPTEE EYLALCLIML  60
ARGGKVNFNL PSSFPSSSSS STAAAAAPKA SLPPPPPHVS TSSDVPKLLY KCSVCNKAFG  120
SYQALGXHKA SHRKLPSGGG DDQPSTSTTT VTTTSTSGVG AGVAETHECS ICHKCFPSGQ  180
ALGGHKRCHY EGTIGGSSGG HSGLTSSEGV GSTNTQPPDF DLNLPAWPEF WSTEDEVESP  240
HPAKKSRFNL PIKVENIKY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.15e-45C2H2 family protein