PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027090430.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

NF-YB

Protein Properties

Length: 250aa MW: 27702.8 Da PI: 6.2784

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027090430.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	131.2	3.5e-41	41	135	2	96
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 r+ ++++Pi+n+ rim++ lP na++s++ak t+qecvs++i f+t+ea+++c+re+rkti+++dll+a a+lGf++y+ p+++yl++yr+ e++ XP_027090430.1 41 RDPEHLFPITNIFRIMRRNLPPNARVSEEAKSTIQECVSDYINFITAEANERCRREHRKTITAEDLLYAHANLGFDNYIGPITLYLERYRQNEAA 135 5668899***********************************************************************************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence
MAAVLVIREL GDAANDVARN PSSPNVSINN NAQMPMPYPR RDPEHLFPIT NIFRIMRRNL 60 PPNARVSEEA KSTIQECVSD YINFITAEAN ERCRREHRKT ITAEDLLYAH ANLGFDNYIG 120 PITLYLERYR QNEAAQNSVH GDPSVRRTTI FSNVHTQGHP SMLAPTPSPL PPINSTFPIG 180 ADEQAFFNQT PMSNEFYFQN ASGASHGDGF DVVGPSSNAE FPRAFFPHNF HPGPTLPHGS 240 DPHGLGPDGQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21970.1	4e-43	NF-YB family protein