PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027090468.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 360aa MW: 41511.2 Da PI: 6.6675

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027090468.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.6	3.8e-22	21	108	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +f n+Y+ vGFsvrk++ +k ++g +t+r+++C keg++ + + + +k +rtraet+tgC+ak+ + +++ + k++v +l+ eHnH+l XP_027090468.1 21 NFCNRYGLGVGFSVRKDYLNKD-KDGVVTSRRYTCCKEGFKPRYEGN-VKPKRTRAETKTGCEAKMGIILNReTMKYQVRDLVIEHNHTL 108 5889************9998.8999**********999988.9***************999989************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MEEALCPKIG MEFQSEDEAY NFCNRYGLGV GFSVRKDYLN KDKDGVVTSR RYTCCKEGFK 60 PRYEGNVKPK RTRAETKTGC EAKMGIILNR ETMKYQVRDL VIEHNHTLHI SECAHMMRSQ 120 RKVSFSQGAQ AEIANDAGIS LKQSHELMGK EAGGLGNIGY TRDDLKRYLR TKRERGLKYG 180 EAGAMLRYFE EQKLENPSFF HAEQLDCEEQ ITNIFWADAS MLMDYTYFGD VVTFDTTYKT 240 NKEYRPLGVF VGFNQFRQLV IFGATLLYDE TIESFKWVFG TFIEAVCGRH PKTIFTDQDA 300 AMAAAISAVM PSTYHGLCTF HIRVNFMKHL GNYYKDGSNL LYRFAECMYE IEDENEFIMA

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MEEALCPKIG MEFQSEDEAY NFCNRYGLGV GFSVRKDYLN KDKDGVVTSR RYTCCKEGFK  60
PRYEGNVKPK RTRAETKTGC EAKMGIILNR ETMKYQVRDL VIEHNHTLHI SECAHMMRSQ  120
RKVSFSQGAQ AEIANDAGIS LKQSHELMGK EAGGLGNIGY TRDDLKRYLR TKRERGLKYG  180
EAGAMLRYFE EQKLENPSFF HAEQLDCEEQ ITNIFWADAS MLMDYTYFGD VVTFDTTYKT  240
NKEYRPLGVF VGFNQFRQLV IFGATLLYDE TIESFKWVFG TFIEAVCGRH PKTIFTDQDA  300
AMAAAISAVM PSTYHGLCTF HIRVNFMKHL GNYYKDGSNL LYRFAECMYE IEDENEFIMA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-63	FAR1 family protein