PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027090714.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Trihelix

Protein Properties

Length: 682aa MW: 74944.5 Da PI: 6.8826

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027090714.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	96.2	2.9e-30	79	163	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r+em+ ++r+++lk+plWeevs+km+e g++rs+k+Ckek+en+ k++k++keg+ ++ + +t+++fdqlea XP_027090714.1 79 RWPRQETLALLKIRSEMDVAFRDSSLKGPLWEEVSRKMAELGYQRSSKKCKEKFENVFKYHKRTKEGRASK--ADGKTYRFFDQLEA 163 8******************************************************************96..66678*****85 PP
2	trihelix	103	2.2e-32	489	574	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r++++ +++++ k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a XP_027090714.1 489 RWPKAEVQALIRMRTNLDVKYQENGPKGPLWEEISSGMRKLGYNRNSKRCKEKWENINKYFKKVKESSKKR-PEDSKTCPYFHQLDA 574 8*******************************************************************8.99*********85 PP

Sequence ? help Back to Top
Protein Sequence Length: 682 aa Download sequence
MMLGTSSSSA GGLIGGNSAE AGAAGATGAA AAIEAGAAPH DSGGSGEVGG GTGGAIPSGF 60 SEDEKARIEE GERAAGGNRW PRQETLALLK IRSEMDVAFR DSSLKGPLWE EVSRKMAELG 120 YQRSSKKCKE KFENVFKYHK RTKEGRASKA DGKTYRFFDQ LEALETNPSM QLPQPPTRPQ 180 PPTAAAAAMA VPMQAAASNP PISSHGTVSS APLSPNPVSF AQNFLPQNVT SNAIPTIPSL 240 PPSQSQHLHP PPPTTNAANP PPPPPHHHHH PSNTSFPHHP SLSTSMLSNS SSSSTSSDED 300 IGRRHLRKRK WKDFFERLMK NVIDKQEELQ KKFLDTLEKR ERDRMIREEA WRVQEMARIN 360 REHDLLVQER SMAAAKDAAV IAFLQKITEQ QNPNNPNTTP IRLPAQLQLP ETTRIPPPAP 420 PPMVPPSMSV SVPQATPVTP IPPPAAAAAV APQPPTQATM GAAPTRNLES SPNKTDNGIQ 480 NFMQPSSSRW PKAEVQALIR MRTNLDVKYQ ENGPKGPLWE EISSGMRKLG YNRNSKRCKE 540 KWENINKYFK KVKESSKKRP EDSKTCPYFH QLDALYREKA KGETTSFASG YPNVKPENPM 600 VPIMARPEQQ WPLQQDQQQQ QQQQQQQQQQ QPDSAMEDHG SDNMDENDHD EDDGDEDEDE 660 DEGAGYEIVT NKQASSVATT VE

Sequence ? help Back to Top

Protein Sequence Length: 682 aa Download sequence

MMLGTSSSSA GGLIGGNSAE AGAAGATGAA AAIEAGAAPH DSGGSGEVGG GTGGAIPSGF  60
SEDEKARIEE GERAAGGNRW PRQETLALLK IRSEMDVAFR DSSLKGPLWE EVSRKMAELG  120
YQRSSKKCKE KFENVFKYHK RTKEGRASKA DGKTYRFFDQ LEALETNPSM QLPQPPTRPQ  180
PPTAAAAAMA VPMQAAASNP PISSHGTVSS APLSPNPVSF AQNFLPQNVT SNAIPTIPSL  240
PPSQSQHLHP PPPTTNAANP PPPPPHHHHH PSNTSFPHHP SLSTSMLSNS SSSSTSSDED  300
IGRRHLRKRK WKDFFERLMK NVIDKQEELQ KKFLDTLEKR ERDRMIREEA WRVQEMARIN  360
REHDLLVQER SMAAAKDAAV IAFLQKITEQ QNPNNPNTTP IRLPAQLQLP ETTRIPPPAP  420
PPMVPPSMSV SVPQATPVTP IPPPAAAAAV APQPPTQATM GAAPTRNLES SPNKTDNGIQ  480
NFMQPSSSRW PKAEVQALIR MRTNLDVKYQ ENGPKGPLWE EISSGMRKLG YNRNSKRCKE  540
KWENINKYFK KVKESSKKRP EDSKTCPYFH QLDALYREKA KGETTSFASG YPNVKPENPM  600
VPIMARPEQQ WPLQQDQQQQ QQQQQQQQQQ QPDSAMEDHG SDNMDENDHD EDDGDEDEDE  660
DEGAGYEIVT NKQASSVATT VE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	3e-49	Trihelix family protein