PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027090991.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

DBB

Protein Properties

Length: 357aa MW: 38415 Da PI: 7.1305

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027090991.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.6	9.2e-07	4	45	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39 C+ +++ e++ fC ++ lC++C H+ H++ XP_027090991.1 4 QCDVCDKGEASVFCVADEAALCNTCDHRVHHAnklaskhHRF 45 7****88******************6445888886666 PP
2	zf-B_box	26.1	1.8e-08	54	92	2	38
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 +++ C+ ++e ++ lfC++++ lC++C +Hk Ht XP_027090991.1 54 QAPLCDICQERRAFLFCQQDRAILCRECDIPIHKAneHT 92 7899*****************************878865 PP

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence
MKIQCDVCDK GEASVFCVAD EAALCNTCDH RVHHANKLAS KHHRFSLLQP PPKQAPLCDI 60 CQERRAFLFC QQDRAILCRE CDIPIHKANE HTEKHNRFLL TGVKLSANSA LYAPSEAAAA 120 ISASTSLTNV SDAVPTFNPQ STVINKPVSI SRENVLQFNP TPRTNAWKAT STTSASANTV 180 TAAAATNEKG TTTTTTTAMN GQTMNGLDTN NSSTPTSSIA EYLIEMLPGW HVEDFLDSSS 240 PFGFCKSTGD GEMIPFWDEG LHSDLSSFLP GNTGLWVPQA APVPLHAHPT TQPQSFSTSS 300 ASNVGFGFGF GGHIGSKDMI SNIKSSRKRN DDNSFAVPQI SPPSSASSKR LKTTTLW

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence

MKIQCDVCDK GEASVFCVAD EAALCNTCDH RVHHANKLAS KHHRFSLLQP PPKQAPLCDI  60
CQERRAFLFC QQDRAILCRE CDIPIHKANE HTEKHNRFLL TGVKLSANSA LYAPSEAAAA  120
ISASTSLTNV SDAVPTFNPQ STVINKPVSI SRENVLQFNP TPRTNAWKAT STTSASANTV  180
TAAAATNEKG TTTTTTTAMN GQTMNGLDTN NSSTPTSSIA EYLIEMLPGW HVEDFLDSSS  240
PFGFCKSTGD GEMIPFWDEG LHSDLSSFLP GNTGLWVPQA APVPLHAHPT TQPQSFSTSS  300
ASNVGFGFGF GGHIGSKDMI SNIKSSRKRN DDNSFAVPQI SPPSSASSKR LKTTTLW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	327	352	RKRNDDNSFAVPQISPPSSASSKRLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39070.1	1e-55	DBB family protein