PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027091062.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MIKC_MADS
Protein Properties Length: 205aa    MW: 23353.3 Da    PI: 9.276
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027091062.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.27e-26958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    k+ien   rqvtf+kRr+g+lKKA+ELSvLCdae+ v+ifs +gklye +
  XP_027091062.1  9 KKIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVVIFSAHGKLYELA 58
                    68*********************************************965 PP
2K-box683.1e-238517411100
           K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     e++    + e++kLk+eie Lq+++R + G + ++++l eL  Le++Le+ + +iRs K+++++++i+ l++ke  l+ +nk+L++k++e
  XP_027091062.1  85 EKEPLDPKDEISKLKQEIEVLQKSLRYMSGGGAGTMTLDELDVLEKHLETWIYHIRSAKMDIMFQEIQLLKNKEGILKAANKYLQEKMDE 174
                     555556689******************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    
MARGKIQMKK IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGVVIFSA HGKLYELATK  60
GTMQGLIDKY GKTCRGRAPA EQAKEKEPLD PKDEISKLKQ EIEVLQKSLR YMSGGGAGTM  120
TLDELDVLEK HLETWIYHIR SAKMDIMFQE IQLLKNKEGI LKAANKYLQE KMDEQHSVVT  180
DMVPLMTTAT NIQYPLTIHS EIYQF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.13e-86MIKC_MADS family protein