PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027091064.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 250aa MW: 26873.6 Da PI: 8.7184

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027091064.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.6	7.6e-42	45	145	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq+++l+ el+ XP_027091064.1 45 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKMLMEVPENQRVDAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQGELH 139 7********************************************************************************************** PP DUF260 96 llkeel 101 ++++e+ XP_027091064.1 140 AVRNEI 145 *99875 PP

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence
MSRESIYRER LDEIAKKLKT EFDASSQMGR RNMLGPPGTL NTITPCAACK LLRRRCAEEC 60 PFSPYFSPHE PQKFAAVHKV FGASNVSKML MEVPENQRVD AANSLVYEAN VRLRDPVYGC 120 MGAISALQQQ VQSLQGELHA VRNEILRYKY REAANNIIAS THAALVSSGN HVSVAMMPQA 180 PATPTPTPAP APSTPTPAPA PPPPPPAQPS ASLVVVSTTS SAPSAPSLYT PPSSTASFST 240 ITNNNIPFFD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	1e-80	LBD family protein