PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027091118.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 194aa MW: 20556 Da PI: 4.2305

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027091118.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	48.6	2.4e-15	28	100	26	98
DUF260 26 qpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +++++ + ++ ++s ++++++a+p+++++++++sl+yeA+ r+ +Pv+Gavg+++++++ ++++++e++l++ XP_027091118.1 28 SSQRHSFRLQVLRRSDLMSFITAVPDSKKPALFQSLLYEACGRTVNPVSGAVGLLSTGNWPVCEAAVETVLAG 100 346777788999******************************************************9998775 PP

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence
MDVEFSEEDA ATNAPLGPVW AGSPLPSSSQ RHSFRLQVLR RSDLMSFITA VPDSKKPALF 60 QSLLYEACGR TVNPVSGAVG LLSTGNWPVC EAAVETVLAG GTLRPMNGVG VLSPDSNEAS 120 EAFCNSGGLW RVQPPFFMHG SDGDEMMVEF ESDQNMSASA SFRSSEASDV WGSFGSCGIE 180 GVGGKEPKLL NLFV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	2e-33	LBD family protein