PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027091324.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Protein Properties

Length: 843aa MW: 92284.3 Da PI: 6.7333

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027091324.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	60.6	2.7e-19	314	413	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kvl+ sd+++ grlvlpk +ae++ +++ e+ ++++d +g++W++++++ +++s++yvl+ G + +L++gD+v+F++++ +++ XP_027091324.1 314 FEKVLSASDAGRIGRLVLPKACAEAYfpPINQSEGLPIRIQDVKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDTVTFSRID-PGGQ 406 99************************666667778***********99899999999.*******************887.6666 PP .EEEEE- CS B3 92 lvvkvfr 98 lv+++++ XP_027091324.1 407 LVMGFRK 413 6666655 PP

Sequence ? help Back to Top
Protein Sequence Length: 843 aa Download sequence
MGSKICMNEA CRLTTSPEWK QGWGLKSGGF ATLCSSCGTA YENLVFCEKF HLDEDGWREC 60 KICRKRIHCG CVASKMLHEF LDFGGVGCIT CVKQMDTPSL RTVKILGDEI PNGTIGHRSF 120 DSLLQLCNNV EVNGSKKMFK PHRVGTNASL GQKKGEGTAL PFEQVNTSSP NFTPQSVGSS 180 MFVKPEISRQ NQGFKDMAES LAQPSVNFSL SNALSASGSA LPISEGIVEG SEQNRVSTAQ 240 QGQRARQILP KPPKPGSSVG SENTKGMGSQ TRIARPPAEG RGRSQLLPRY WPRITDQELQ 300 QISGDLKSTV VPLFEKVLSA SDAGRIGRLV LPKACAEAYF PPINQSEGLP IRIQDVKGKE 360 WTFQFRFWPN NNSRMYVLEG VTPCIQNMQL QAGDTVTFSR IDPGGQLVMG FRKSTTNVET 420 QTQDPQPSGL PNGGSPGETS YLGASDNMLA ISENGNNGGQ IHEDSSQRNI LIPEKKKARN 480 IGLKNKRLLM HSDDAMELRV TWEEAQELLR PPTNSPTIIK IEDCEFEEYD EPPIFGKRTI 540 FTVQPSGQQE QWAQCDNCSK WRRLPMHVLV PARWTCPDNA WVSNSSCSAP DDINPRELEA 600 LNIASKDFKR RRIVETKVAE DYEPSGLDAL ATAAVLGDNM GDLTEMSVGA TTKHPRHRPG 660 CSCIVCIQPP SGKGKHPTSC KCNVCLTVKR RFKTLMMRKK KRQSDREAEL LQGKDEETPP 720 LDMSEMEGAA EHALLLTNHS DAERSQNGSL MEAGESNKGQ LDLNCHPSRE EDMLAEAAAG 780 INLATLIDAA SIPLDVYMRQ DGVASVSHHL LPSHAPGDGE GSLPEEGCSA SANMGPEKKG 840 KEE

Sequence ? help Back to Top

Protein Sequence Length: 843 aa Download sequence

MGSKICMNEA CRLTTSPEWK QGWGLKSGGF ATLCSSCGTA YENLVFCEKF HLDEDGWREC  60
KICRKRIHCG CVASKMLHEF LDFGGVGCIT CVKQMDTPSL RTVKILGDEI PNGTIGHRSF  120
DSLLQLCNNV EVNGSKKMFK PHRVGTNASL GQKKGEGTAL PFEQVNTSSP NFTPQSVGSS  180
MFVKPEISRQ NQGFKDMAES LAQPSVNFSL SNALSASGSA LPISEGIVEG SEQNRVSTAQ  240
QGQRARQILP KPPKPGSSVG SENTKGMGSQ TRIARPPAEG RGRSQLLPRY WPRITDQELQ  300
QISGDLKSTV VPLFEKVLSA SDAGRIGRLV LPKACAEAYF PPINQSEGLP IRIQDVKGKE  360
WTFQFRFWPN NNSRMYVLEG VTPCIQNMQL QAGDTVTFSR IDPGGQLVMG FRKSTTNVET  420
QTQDPQPSGL PNGGSPGETS YLGASDNMLA ISENGNNGGQ IHEDSSQRNI LIPEKKKARN  480
IGLKNKRLLM HSDDAMELRV TWEEAQELLR PPTNSPTIIK IEDCEFEEYD EPPIFGKRTI  540
FTVQPSGQQE QWAQCDNCSK WRRLPMHVLV PARWTCPDNA WVSNSSCSAP DDINPRELEA  600
LNIASKDFKR RRIVETKVAE DYEPSGLDAL ATAAVLGDNM GDLTEMSVGA TTKHPRHRPG  660
CSCIVCIQPP SGKGKHPTSC KCNVCLTVKR RFKTLMMRKK KRQSDREAEL LQGKDEETPP  720
LDMSEMEGAA EHALLLTNHS DAERSQNGSL MEAGESNKGQ LDLNCHPSRE EDMLAEAAAG  780
INLATLIDAA SIPLDVYMRQ DGVASVSHHL LPSHAPGDGE GSLPEEGCSA SANMGPEKKG  840
KEE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	609	613	KRRRI
2	689	700	KRRFKTLMMRKK
3	689	702	KRRFKTLMMRKKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30470.1	0.0	B3 family protein