PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027091562.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 345aa    MW: 39421.9 Da    PI: 9.5156
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027091562.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.23e-1825112196
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ff++l  s  + +++l +p kfa++ ++k      ++l+ +sg +W+  l  +  +++ +l++GWk+Fv ++ Lke+D+++Fk++g s+f   v 
  XP_027091562.1  25 FFQTL--SGRNYRNQLAIPQKFANNLKEK--LVGAVSLKGPSGLEWKAGL--TMIDDTLYLKEGWKKFVVDHSLKENDVLIFKYVGASRF--DVL 111
                     67777..78888999********555444..5558***************..99999****************************99888..555 PP

                     E CS
              B3  96 v 96 
                     +
  XP_027091562.1 112 M 112
                     5 PP
2B344.52.8e-14225306186
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                     f+ v+ p +v +   l +p + a++++ +  +s++ltl+  + ++W+v++ y++  ++  l++GWk+Fv++n L+e D+++F l+ 
  XP_027091562.1 225 FIVVMRPTHVYRGFYLQIPSEWATKYMPN--RSQDLTLQV-KDKTWKVRF-YKRDYRTGGLAGGWKRFVHENFLEEFDVCLFNLVT 306
                     788999********************866..566677555.66*******.7666666789*********************9874 PP
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    
MGDDGRACRK WEEEIYWSHF QSAQFFQTLS GRNYRNQLAI PQKFANNLKE KLVGAVSLKG  60
PSGLEWKAGL TMIDDTLYLK EGWKKFVVDH SLKENDVLIF KYVGASRFDV LMFDYQSLCE  120
KESSYFIKRC ENGGTDGGCK RKDNPTETIE VTNEASHDVS ESTPSKRPRK HGALPPRSRG  180
RQRGTCSSIN RSVFSGPASH RRQVTEEDKD EALKMACASA SENSFIVVMR PTHVYRGFYL  240
QIPSEWATKY MPNRSQDLTL QVKDKTWKVR FYKRDYRTGG LAGGWKRFVH ENFLEEFDVC  300
LFNLVTGAAT DDIVMDVSIF KVVEGVIPVT RLPPINLKGR KPMKI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-61B3 family protein