PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027092410.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 262aa MW: 29320.3 Da PI: 8.0691

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027092410.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.6	1.4e-18	39	84	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd++l ++v+++G ++W++I++++ gR++k+c++rw + XP_027092410.1 39 KGPWSAEEDKILTRLVEKYGARNWSLISNYIK-GRSGKSCRLRWCNQ 84 79***************************9.*********985 PP
2	Myb_DNA-binding	58	2.1e-18	93	135	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++eEd+ ++ a++++G++ W+tIar ++ gRt++ +k++w++ XP_027092410.1 93 PFSPEEDDTILAAHAKYGNR-WATIARLLP-GRTDNAVKNHWNST 135 89****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence
MDSFYRCSSA TSSSSDSSSS DSSLSGKTPR DASRSERIKG PWSAEEDKIL TRLVEKYGAR 60 NWSLISNYIK GRSGKSCRLR WCNQLSPSVE HRPFSPEEDD TILAAHAKYG NRWATIARLL 120 PGRTDNAVKN HWNSTLKRRY QQQKETNHQQ QQENQMTEAM DIAADVKNEF SGFVPFSESN 180 NNNITATSTS RVNSRVVPFT DYDESDPMTT LSLAPPGMYR GPGLGAEENL PAGFWDAMRN 240 VIAREVREYV ASSFSATSPG FH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50060.1	5e-58	MYB family protein