PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027092989.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MIKC_MADS
Protein Properties Length: 227aa    MW: 25597.5 Da    PI: 6.7735
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027092989.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.56.2e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+i+n + rqvtfskRr g++KKAeEL vLCda+va+iifs tgkl+e++s
  XP_027092989.1  9 KKIDNITARQVTFSKRRRGLFKKAEELAVLCDADVALIIFSATGKLFEFAS 59
                    68***********************************************86 PP
2K-box52.81.8e-18911711999
           K-box  19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                       + +L ke+    +++R+++GedL+ L+++eLqqLe+ Le +l+++ ++K e ++++i+ lqkk  el eenk+L++k++
  XP_027092989.1  91 SCHVRLSKEVADRTHQLRQMKGEDLQGLKIEELQQLEKVLEAGLTRVLQTKGERIMNEINALQKKGAELFEENKQLKQKMA 171
                     4466889999999999**************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MAREKIKIKK IDNITARQVT FSKRRRGLFK KAEELAVLCD ADVALIIFSA TGKLFEFASS  60
SMSDILGKYK LHSSNLEKTE QPSLELQLEN SCHVRLSKEV ADRTHQLRQM KGEDLQGLKI  120
EELQQLEKVL EAGLTRVLQT KGERIMNEIN ALQKKGAELF EENKQLKQKM AMLYEGKRPV  180
IPDLDKDMLI EEGQSSESIT NVCSCNSGPP PEDDCSDTSL KLGLPFN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.12e-99MIKC_MADS family protein