PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027093277.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MIKC_MADS

Protein Properties

Length: 254aa MW: 29583.7 Da PI: 7.6353

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027093277.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	86.3	1.8e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++ rqvtfskRr g+lKK +ELSvLCda++ +iifs++gkl+ey+s XP_027093277.1 9 KRIENNTSRQVTFSKRRSGLLKKTHELSVLCDAQIGLIIFSNKGKLFEYCS 59 79***********************************************96 PP
2	K-box	62.2	2e-21	83	170	7	94
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 ++l+++++e+ el+++k+e+ nLq ++ +++G+dL+s + eL+qLeqqLe s++k+R++K ell +q+e+l++ ek l++en+++ XP_027093277.1 83 EDLAKSHNERVFGELKRMKSETLNLQLSLQRYKGDDLSSAHYDELNQLEQQLELSVTKVRARKFELLDQQLENLKRTEKLLEKENQEM 170 558899999****************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence
MGRGKIELKR IENNTSRQVT FSKRRSGLLK KTHELSVLCD AQIGLIIFSN KGKLFEYCSH 60 PLSIDQIIER YLKTKGTSIP DHEDLAKSHN ERVFGELKRM KSETLNLQLS LQRYKGDDLS 120 SAHYDELNQL EQQLELSVTK VRARKFELLD QQLENLKRTE KLLEKENQEM CTWLMSNYYQ 180 KQRVELEHSH QQAMTELKLV GQHAILDQFP FSGEEQPSEV LQLANLPLNI HQYRLQPIQP 240 NLQDYGQPGC SYGN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23260.2	2e-59	MIKC_MADS family protein