PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027093335.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family ERF
Protein Properties Length: 249aa    MW: 26742.9 Da    PI: 5.0724
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027093335.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-184090155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++ykGVr ++ +g+Wv+eIr p   ++++r++lg++ tae Aa+a++aa ++l+g
  XP_027093335.1 40 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 90
                    59*****998.**********9...336************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    
MVKTEHKIQS EPAKPTKPIP SSSSSSSSSS SSKSKSSCKK KYKGVRMRSW GSWVSEIRAP  60
NQKTRIWLGS YSTAEAAARA YDAALLCLKG SSANLNFPIS SYSLRFPESL VMSPKSIQRV  120
AAAAAATVST TTTATATDPE SPDSPSQPST SSYSASESAS SPTPSLSSSP PDHPPYIIEE  180
EDISASVSLP PANLLDEAVM PMTMNAAAGQ WYTFDSPKYT DMVNGVFFDP MMMIEDVYEE  240
GDINLWSFC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.12e-30ERF family protein