PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027093414.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MIKC_MADS

Protein Properties

Length: 205aa MW: 23249.1 Da PI: 9.0397

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027093414.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	81.2	7e-26	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k+ien rqvtf+kRr+g+lKKA+ELSvLCdae+ v+ifs +gklye + XP_027093414.1 9 KKIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVVIFSAHGKLYELA 58 68*********************************************965 PP
2	K-box	66.5	9e-23	85	174	11	100
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 e++ + e+++Lk+eie Lq+++R + G + ++++l eL Le++Le+ + +iRs K+++++++i+ l++ke l+ +nk+L++k++e XP_027093414.1 85 EKEPLDPKDEISNLKQEIEVLQKSLRYMSGGGAGTMTLDELDVLEKHLETWIYHIRSAKMDIMFQEIQLLKNKEGILKAANKYLQEKMDE 174 555556689******************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence
MARGKIQMKK IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGVVIFSA HGKLYELATK 60 GTMQGLIDKY GKTCRGRAPA EQAKEKEPLD PKDEISNLKQ EIEVLQKSLR YMSGGGAGTM 120 TLDELDVLEK HLETWIYHIR SAKMDIMFQE IQLLKNKEGI LKAANKYLQE KMDEQHSVTD 180 MVPLLTAAAT NIQYPLTVHS EIYQF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71692.1	1e-84	MIKC_MADS family protein