PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027093545.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family FAR1
Protein Properties Length: 160aa    MW: 18519.4 Da    PI: 9.6851
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027093545.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.62.7e-2026113189
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                     kfYn+YA ++ Fsvrk++ +k  ++g it+r++ C k+g +++ + +    +r ra t+tgC ak+ + + + + k++v++l+leHn el
  XP_027093545.1  26 KFYNKYAFKMSFSVRKDYLNKD-KDGVITSRRYSCCKKGVKRKYEGD-AMPKRIRAPTKTGCGAKMIIVLLRgTMKYRVHDLVLEHNLEL 113
                     6*****************9998.8999*************9999988.889999************9999888**************777 PP
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    
MDCSKLTEDK IPELGMEFNS EEDAYKFYNK YAFKMSFSVR KDYLNKDKDG VITSRRYSCC  60
KKGVKRKYEG DAMPKRIRAP TKTGCGAKMI IVLLRGTMKY RVHDLVLEHN LELHITQCSH  120
MMPSQRKVSE VQGFQREISK DAGFSLKQSH ELMGKETNFG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.12e-13FAR1 family protein