PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027093617.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

M-type_MADS

Protein Properties

Length: 368aa MW: 41545.2 Da PI: 4.0029

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027093617.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	40.3	4e-13	10	60	2	50
---SHHHHHHHH...HHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtf...skRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +++ + n +v+f +R +gi KKA EL LCd+ v+v+i+ ++gk+++++ XP_027093617.1 10 KSKQSLNSKVSFkvcKNRVAGI-KKAMELALLCDIPVCVVIIEPSGKIQTWP 60 5788899999995533677776.****************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MEKKALKSSK SKQSLNSKVS FKVCKNRVAG IKKAMELALL CDIPVCVVII EPSGKIQTWP 60 ENHNDVQSVI DKYSEKEQAR SLSAKDREHP LEKSIDGEID PVELVKILDS KIEKIKNKIE 120 EGMVKDGAAA INVAEIDKMD NAVDLFDFDQ YEIDNAAEYL DAIDFLDQEE TENPGKVLDF 180 VDLNPDQDEK TSTAEYLDAI DFLNHEEIEN PGKVLDFVDL DPDKDEKTST FIQSPHQEEI 240 SQKRRFLGSG FSYWDESSTD FSDWDQLCTD WEKFSGDFGE GAEISTDFDV RRLIPIDSDF 300 DMLPQLHNSD PIGSSYENPL FTGYEFPQIP LETDIAMDDP MTELLQFGDF LSADVGNSDF 360 SIPLMAGF

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MEKKALKSSK SKQSLNSKVS FKVCKNRVAG IKKAMELALL CDIPVCVVII EPSGKIQTWP  60
ENHNDVQSVI DKYSEKEQAR SLSAKDREHP LEKSIDGEID PVELVKILDS KIEKIKNKIE  120
EGMVKDGAAA INVAEIDKMD NAVDLFDFDQ YEIDNAAEYL DAIDFLDQEE TENPGKVLDF  180
VDLNPDQDEK TSTAEYLDAI DFLNHEEIEN PGKVLDFVDL DPDKDEKTST FIQSPHQEEI  240
SQKRRFLGSG FSYWDESSTD FSDWDQLCTD WEKFSGDFGE GAEISTDFDV RRLIPIDSDF  300
DMLPQLHNSD PIGSSYENPL FTGYEFPQIP LETDIAMDDP MTELLQFGDF LSADVGNSDF  360
SIPLMAGF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02235.1	1e-09	M-type_MADS family protein