PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027093639.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 369aa MW: 42032.7 Da PI: 6.5086

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027093639.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.7	2.9e-21	83	173	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn YAk GF +rks+ k+ ++g r++vC +eg+r+e+ + ++++r+ +a trtgC a+++vk ++ + k++vt++ eHnH+la XP_027093639.1 83 EFYNLYAKLSGFGIRKSNAKRD-EDGISRFRKWVCCCEGYRNEKWFNyEDRKREAKAITRTGCGACFRVKYDTeSVKYVVTRFIMEHNHPLA 173 6**************98887.8898999********9988767889999*************9899************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MGCLKLMTWC RKIEKGKMGM DGCGRLMSFD LNQEPECDRD TCSEESGGSI GGHEDEEADE 60 LVGAIGVDDV MKLTFDTEEE AGEFYNLYAK LSGFGIRKSN AKRDEDGISR FRKWVCCCEG 120 YRNEKWFNYE DRKREAKAIT RTGCGACFRV KYDTESVKYV VTRFIMEHNH PLASEASVQH 180 LRSHRKVSDA EYAQAKSLKL VGARICQIMK HFVIKAGGYS NVGFCIKDLY NRMDEERRKD 240 IFNGDAEGAL GFLAAKKDAD DMFFYKYHVD NEGRLARLFW ADSKSRVDFS VFGDVLVFDT 300 TYKTNKYRKP LVVLAGVNNH LNSTIFGCAL LSDERIETYE WVLSTFVEAM KGRKPVAVMT 360 DGTVQCEER

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MGCLKLMTWC RKIEKGKMGM DGCGRLMSFD LNQEPECDRD TCSEESGGSI GGHEDEEADE  60
LVGAIGVDDV MKLTFDTEEE AGEFYNLYAK LSGFGIRKSN AKRDEDGISR FRKWVCCCEG  120
YRNEKWFNYE DRKREAKAIT RTGCGACFRV KYDTESVKYV VTRFIMEHNH PLASEASVQH  180
LRSHRKVSDA EYAQAKSLKL VGARICQIMK HFVIKAGGYS NVGFCIKDLY NRMDEERRKD  240
IFNGDAEGAL GFLAAKKDAD DMFFYKYHVD NEGRLARLFW ADSKSRVDFS VFGDVLVFDT  300
TYKTNKYRKP LVVLAGVNNH LNSTIFGCAL LSDERIETYE WVLSTFVEAM KGRKPVAVMT  360
DGTVQCEER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-53	FAR1 family protein