PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027093718.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

NF-YB

Protein Properties

Length: 244aa MW: 27245.3 Da PI: 6.7971

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027093718.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	94.6	8.6e-30	37	129	4	96
NF-YB 4 qdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 ++++ i+n+ rim++++ na++ k+ak t++ecvs+ i f+t ea+++ + e+ kti++++l +a a+lGf+ yv p+++yl++yr+ e++ XP_027093718.1 37 PEHLFTITNICRIMRHIFLPNARVFKEAKSTIEECVSKDINFITMEANERYHSEHCKTITAKNLTYAHANLGFDSYVSPITLYLERYRQNEAA 129 567889**********************************************************************************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence
MREPGDAANN VTRSPGSAHV NNNSNVRMPM PHPRQDPEHL FTITNICRIM RHIFLPNARV 60 FKEAKSTIEE CVSKDINFIT MEANERYHSE HCKTITAKNL TYAHANLGFD SYVSPITLYL 120 ERYRQNEAAQ NTMHGDAFER HTTIFPNVHT QGHPSMLAPA PSHSPPINST FQVGADEQAF 180 FNPTLMSKEF YFQNSPGASH GDGFDVAGLS SNAEFPRTFF PHDFHPGPTL PHGSHPHGLG 240 LDGQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21970.1	4e-27	NF-YB family protein