PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027093747.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family FAR1
Protein Properties Length: 205aa    MW: 23156.2 Da    PI: 8.717
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027093747.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR181.41.6e-2573160190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     ++Y +YAk vGF vrksks++  + g+ + rtf+Cs egkr ++k++  + + +r++tr+gC a++kv+ +++gk++v++++ eHnH l+
  XP_027093747.1  73 QYYLAYAKLVGFGVRKSKSHND-KYGKLIARTFCCSAEGKRGKDKQD-GSVKAPRPKTRCGCLARMKVNSRQTGKFRVIEFVVEHNHYLS 160
                     69***************99888.6777****************9999.999************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    
MGSKPSPCRQ LHFEEFKEQE EDFDIVNEGN IHDIEETSGL NSVKDLNKIH SSIPNETIPH  60
IGMEFETEDQ AWQYYLAYAK LVGFGVRKSK SHNDKYGKLI ARTFCCSAEG KRGKDKQDGS  120
VKAPRPKTRC GCLARMKVNS RQTGKFRVIE FVVEHNHYLS SPNKTHLYRS HRSITSNLAV  180
DIEMAHNVGI APKVAHELMA RQAGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-24FAR1 family protein