PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027093831.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

TCP

Protein Properties

Length: 191aa MW: 19900.9 Da PI: 5.8562

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027093831.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	81.6	2e-25	1	89	24	118
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaakskksqksaasalnlakesrak 117 ++a caar+F+L++e G+++d++tieWLlqqa+pai+++tgt++++a+ + + s +ss+ sa++sk++++s +sal+la++ ++ XP_027093831.1 1 MPAACAARIFQLTREQGHKSDGETIEWLLQQAEPAIIAATGTGTIPANIStLNISVRSSGF-------TLSAPPSKSAPHSFHSALALAHHPYEE 88 9**********************************************87733333333333.......222334555555555555555554443 PP TCP 118 a 118 XP_027093831.1 89 G 89 3 PP

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence
MPAACAARIF QLTREQGHKS DGETIEWLLQ QAEPAIIAAT GTGTIPANIS TLNISVRSSG 60 FTLSAPPSKS APHSFHSALA LAHHPYEEGF SHMLGFQQQQ QHLLAANQMT EAIPSGDGGG 120 DSGGGGGQDA TESYLRKRYR EDLFKEEGSS GRQGDGADET SPSPPNKQFK VGGGGGGMQI 180 PKTQDVGGIL G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	2e-36	TCP family protein