PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027094795.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB_related

Protein Properties

Length: 438aa MW: 46403.5 Da PI: 10.0176

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027094795.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25	4.4e-08	199	243	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 r++WT Ed+ l av+++G g+W+ I + Rt+ q+ rw XP_027094795.1 199 RKAWTDVEDQELMAAVRKFGEGNWANILKGDFkSDRTASQLSQRW 243 789************************874223566666666666 PP

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence
MGEKSKKPRK NFVTEEDFST LLQRYTATTV LTLLQEVAQM EDSKIDWNVL VKKSKTGISN 60 PREYQMLWRH LAYRDALLDR LDDAAAQPLD DDSDLECDLE AFPAVSNEAL AEAAACVKVL 120 IASGPSDPNG LTVEAPLTIN IPKGQPSRAP ENSHCNVFAQ GTNITVPVSV QKPSLPSVAS 180 AEALDSNGAA NANLPRRKRK AWTDVEDQEL MAAVRKFGEG NWANILKGDF KSDRTASQLS 240 QRWAIIKKRR VMTLGTGSQL SEVQLAARRA VSLALNMPMG DTLKSSPSIS SGTNANVAHS 300 KLGPPHSNET PSIVAPLQHD SVSTAGHQIG SSKSRVTTKK PSTKSTISSD SMVKAAAVAA 360 GARIATPSDA ATLLKAAQSK NAVHIMPGGS VLKSSMAGNA NSLPSNVHFI RTGLASKPLS 420 TYSTAAVSSS QNGGLSKS

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence

MGEKSKKPRK NFVTEEDFST LLQRYTATTV LTLLQEVAQM EDSKIDWNVL VKKSKTGISN  60
PREYQMLWRH LAYRDALLDR LDDAAAQPLD DDSDLECDLE AFPAVSNEAL AEAAACVKVL  120
IASGPSDPNG LTVEAPLTIN IPKGQPSRAP ENSHCNVFAQ GTNITVPVSV QKPSLPSVAS  180
AEALDSNGAA NANLPRRKRK AWTDVEDQEL MAAVRKFGEG NWANILKGDF KSDRTASQLS  240
QRWAIIKKRR VMTLGTGSQL SEVQLAARRA VSLALNMPMG DTLKSSPSIS SGTNANVAHS  300
KLGPPHSNET PSIVAPLQHD SVSTAGHQIG SSKSRVTTKK PSTKSTISSD SMVKAAAVAA  360
GARIATPSDA ATLLKAAQSK NAVHIMPGGS VLKSSMAGNA NSLPSNVHFI RTGLASKPLS  420
TYSTAAVSSS QNGGLSKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	1e-61	MYB_related family protein