PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027095411.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 218aa    MW: 24462.2 Da    PI: 5.6796
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027095411.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.76.2e-092291847
                     HTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 18 qlGggtWktIartmgkgRtlkqcksrwqky 47
                     q G++ W+ Ia++++ gR  +++k++w++ 
   XP_027095411.1  2 QVGNR-WAEIAKRIP-GRAVNSIKNHWNTT 29
                     77999.*********.************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    
MQVGNRWAEI AKRIPGRAVN SIKNHWNTTK RRQNSRGKVK KPERVQNERN QSTILQEYIK  60
STYPNNNSLT TISVDLSSTI VIPTNSATTC PTFPNSIISE DPSSTHFNLL YPELSQSTTD  120
DSLFYLTQHS YDDEINFMQN LLGNNNLNAF LVGENDKGKA LLDIGIDPKG DQENNQSAHI  180
MDEGNALTAP PEIYPSNMNM KTITMDQTSP SSRKEVDL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.14e-18MYB family protein