PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027095442.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 258aa MW: 29342 Da PI: 8.0354

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027095442.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.4	2.8e-06	95	114	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C+k+F+r n++ H+ XP_027095442.1 95 FSCPVCNKTFNRYNNMQMHM 114 89*****************9 PP
2	zf-C2H2	16.9	1.8e-05	180	202	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cgk+F + + ++H +++ XP_027095442.1 180 FQCRKCGKPFAVRGDWRTHEKNC 202 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence
MQRIHCCSNI SSGQNNTSKN LLDCSFEYSS CQLPQDNYQQ CPRTSAENGV TVALHIGLPT 60 SEASSTSHAH NFGVLPEGQY WIPTPAQILV GPTQFSCPVC NKTFNRYNNM QMHMWGHGSQ 120 YRKGPESLRG TKPASSMLKL PCYCCAEGCK NNIDHPRSRP LKDFRTLQTH YKRKHGTKPF 180 QCRKCGKPFA VRGDWRTHEK NCGKLWFCIC GSDFKHKRSL KDHIRAFGDG HAAHSQDLRG 240 IEELVELEED DEEEEDNY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13290.1	1e-116	C2H2 family protein