PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027095447.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family Whirly
Protein Properties Length: 270aa    MW: 30256 Da    PI: 9.5651
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027095447.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly213.22.7e-66932301138
          Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 
                     svyk+kaal+ +++ p+f+ ldsg++kl+++G++ll++a+a+++r+ydW++kq+f+ls+ e+++l++l++k+sceffhdp++++s+eG+vrk+lk
  XP_027095447.1  93 SVYKGKAALTAEPRPPEFTPLDSGAFKLSKEGFVLLQFAPAASVRQYDWSRKQVFSLSVNEIGSLISLGAKDSCEFFHDPFKGKSDEGRVRKVLK 187
                     79********************************************************************************************* PP

          Whirly  96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsll 138
                     vePlpdGsG+f+nlsv+n+l++++e++++Pv+kaefavl s +
  XP_027095447.1 188 VEPLPDGSGHFFNLSVQNKLINVDENIYIPVTKAEFAVLTSGF 230
                     ***************************************9866 PP
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    
MLHLNFSSSL SPIQNPSKQH PPPQSYHAFF SNNTSPFNLK TKTSSLSFSN STKNLTLKCR  60
HSGYFEPQEP QQQRFSPPDQ QGTLPSRVYV GYSVYKGKAA LTAEPRPPEF TPLDSGAFKL  120
SKEGFVLLQF APAASVRQYD WSRKQVFSLS VNEIGSLISL GAKDSCEFFH DPFKGKSDEG  180
RVRKVLKVEP LPDGSGHFFN LSVQNKLINV DENIYIPVTK AEFAVLTSGF NFILPYLIGW  240
HAFATSVKPE DASRVNYTNA RSGSEYEWSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.11e-117Whirly family protein