PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027095618.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 242aa    MW: 27302.8 Da    PI: 9.1334
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027095618.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.5e-08157204455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++iN+++  L++l+P +     k +  a +L   ++Y++sLq
  XP_027095618.1 157 SHSLAERMRREKINQKLRCLQDLVPGC----YKSMGMAVMLDVIINYVRSLQ 204
                     8*************************8....355888889999999998887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    
MMNSNMDVVN SLTEIDSFNP NVQELLSLTT HVGFSDHNRQ QSQIPFCFSN DASHNPNANH  60
PHHLQVPLDF ESAAQFFPQG GVPISHGCND SNSSLSEPDY LANSSSRGSA SAGIPVNKPK  120
GTYNYGEKKR KRSNGKETEK PKEVVHVRAK RGQATDSHSL AERMRREKIN QKLRCLQDLV  180
PGCYKSMGMA VMLDVIINYV RSLQNQIDQV YFMTSTRWTW MPYLQPKHVL ISQDLLGVKR  240
KD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128133KKRKRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25330.19e-44bHLH family protein