PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027095620.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 175aa    MW: 19333.6 Da    PI: 10.0812
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027095620.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.38.6e-061591850
                    HHHHHHHHHHHHHHHHHCTSCC.C...................................TTS-.STCHHHHHHHHHH CS
             HLH  8 rErrRRdriNsafeeLrellPk.as................................kapskK.lsKaeiLekAveY 50
                     Er RR+++++ +++L +ll + as                                k +++   s a+ + +Av+ 
  XP_027095620.1 15 TERHRRQQMKNLYSKLASLLLPpASevnlplpalldyslthvknlkeriqeleakkeKFKGQIgSSTADFVLQAVKI 91
                    6*******************995657777777777777777777777776666666555555555556666666555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    
MQAGNLKPRI PRGVTERHRR QQMKNLYSKL ASLLLPPASE VNLPLPALLD YSLTHVKNLK  60
ERIQELEAKK EKFKGQIGSS TADFVLQAVK IIEKGPILEV NLETGLHKRF ILPEVISILE  120
AGGAQVLSAS YATLTDRVLY TISSEASSPR IGIETSRLHE RLKALAGTGC FFCSL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.16e-24bHLH family protein