PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027095667.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family NF-YC
Protein Properties Length: 134aa    MW: 15311.7 Da    PI: 10.6105
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027095667.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC452.4e-1411961397
           NF-YC 13 atdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97
                    a++ ++  +P  r+kki+k d ++k++ +ea  l+s++ +lf+  l+ +s     e+k++t+k   + aav+r   + dfl+d  p
  XP_027095667.1 11 AEETHRPGIPTHRVKKIMKLDREIKKVNSEAVFLISNSTQLFLQFLAEKSAQVVLEKKKKTIKLEHLRAAVKRHLpTSDFLLDSLP 96
                    444556679***************************************************************975389*****987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    
MMAEHEEQNA AEETHRPGIP THRVKKIMKL DREIKKVNSE AVFLISNSTQ LFLQFLAEKS  60
AQVVLEKKKK TIKLEHLRAA VKRHLPTSDF LLDSLPPPAQ PSDQLPKDRP RPRSSDKPVP  120
PGSRRIDAFF NKCN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.15e-43NF-YC family protein