PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027095904.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 202aa MW: 22584.4 Da PI: 10.3026

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027095904.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.6	3.4e-06	37	82	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 E+ RR + ++ +++L +llP+ a +++Kl+ + +e+ Y+k+L XP_027095904.1 37 VKEKLRRLHFKNLYSRLASLLPPlA---SQEKLTLPALVEQSFVYLKDL 82 57*******************55...****************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence
MQAPVTSNPN KKKKRHCTVK GLKMQPEGVS CKIGRRVKEK LRRLHFKNLY SRLASLLPPL 60 ASQEKLTLPA LVEQSFVYLK DLKKRIDELN AKKEELKEDL VLPAIEMSEK GPILEVNLVT 120 SLKKGFTLHE VISILEEEGA QVLSANYSTS KNRIFYTISS QAYSSRIGIE TSRVYQRLKT 180 LSAAGFAPPA LGGTLCPLQF EG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	11	40	KKKKRHCTVKGLKMQPEGVSCKIGRRVKEK
2	12	41	KKKKRHCTVKGLKMQPEGVSCKIGRRVKEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10586.1	3e-26	bHLH family protein