PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027095991.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 607aa MW: 70699.2 Da PI: 8.4933

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027095991.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.4	2e-22	26	113	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +fYn+YA ++GFs rk++ +k ++g +t+r++ C keg +++ + + + +rtra t+tgC a++++ + + + k++v++l+leHnHel XP_027095991.1 26 QFYNKYAFKMGFSERKDYLNKD-KDGVTTSRRYSCCKEGVKRKYEGD-VMPKRTRAPTKTGCGAQMVIVLFRgTMKYRVHDLVLEHNHEL 113 6***************9998.8999************9999.999***************999**************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 607 aa Download sequence
MDCSKLAEDG TPVLGMEFNS EEDAYQFYNK YAFKMGFSER KDYLNKDKDG VTTSRRYSCC 60 KEGVKRKYEG DVMPKRTRAP TKTGCGAQMV IVLFRGTMKY RVHDLVLEHN HELHIAQCAH 120 MMPSQRKVSE TQGFQAEISE DAGLSLKQSH ELMGKEAGGM GNVGYTREDL KRYLRTRRER 180 SLKYGEAGSM LNYFQEQTLE NPSFFHAVQL GCEEQITNIF WADAGMLIDY KFFGDVVTFD 240 TTYKTNKEYR PLGVFVGFNQ HRQIVIFSAA LMYDETIDSF KWVFGTFLEA MCGKRPSTIL 300 TDQDHAMTAA LSVVMPETFH GLCTFHIRRN FMKHFGNHYK ENSDLPYMFG ACMYEFEEVE 360 QFNRVWEAMV KKHNLENNEW LSGLYRIRNK WARCMMKERW TAGMRSTQLS ESLNAAIKNH 420 LKLDHDLVQF FRHFNRVVDE KRHNELIAEY EMRHKLPMVG LRQTPMLVHA SDTYSPTVFV 480 VFQNEYGEST AMVILRQQDA AMIVEFAVMR YDGGLERIVV FNRNDLNVRC SCKKYENEGI 540 LCGHALKVFD TVGIKIILLE YIKRRWTKRA RAGDCFDRRR REVVADPKIM ISTRYRELAP 600 AMIKVAT

Sequence ? help Back to Top

Protein Sequence Length: 607 aa Download sequence

MDCSKLAEDG TPVLGMEFNS EEDAYQFYNK YAFKMGFSER KDYLNKDKDG VTTSRRYSCC  60
KEGVKRKYEG DVMPKRTRAP TKTGCGAQMV IVLFRGTMKY RVHDLVLEHN HELHIAQCAH  120
MMPSQRKVSE TQGFQAEISE DAGLSLKQSH ELMGKEAGGM GNVGYTREDL KRYLRTRRER  180
SLKYGEAGSM LNYFQEQTLE NPSFFHAVQL GCEEQITNIF WADAGMLIDY KFFGDVVTFD  240
TTYKTNKEYR PLGVFVGFNQ HRQIVIFSAA LMYDETIDSF KWVFGTFLEA MCGKRPSTIL  300
TDQDHAMTAA LSVVMPETFH GLCTFHIRRN FMKHFGNHYK ENSDLPYMFG ACMYEFEEVE  360
QFNRVWEAMV KKHNLENNEW LSGLYRIRNK WARCMMKERW TAGMRSTQLS ESLNAAIKNH  420
LKLDHDLVQF FRHFNRVVDE KRHNELIAEY EMRHKLPMVG LRQTPMLVHA SDTYSPTVFV  480
VFQNEYGEST AMVILRQQDA AMIVEFAVMR YDGGLERIVV FNRNDLNVRC SCKKYENEGI  540
LCGHALKVFD TVGIKIILLE YIKRRWTKRA RAGDCFDRRR REVVADPKIM ISTRYRELAP  600
AMIKVAT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	563	581	KRRWTKRARAGDCFDRRRR
2	577	582	DRRRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-105	FAR1 family protein