PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027096054.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family FAR1
Protein Properties Length: 116aa    MW: 13509.6 Da    PI: 9.5112
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027096054.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.48.8e-2226113189
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                     kfYn+YA ++GFsv k++ +k  ++g +t+r++   keg +++ +++ +  +rtr+ t++gC ak+++ + + + k++v++l+leHnHel
  XP_027096054.1  26 KFYNKYAFKMGFSVHKDYLNKD-KDGVTTSRRYSYCKEGVKRKYESD-VMPKRTRVATKIGCGAKMVIVLFRgTMKYRVHDLVLEHNHEL 113
                     6*****************9998.788899999998889988888888.899*******************999****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    
MDCSKLAEDG TPELGIEFNS EKDAYKFYNK YAFKMGFSVH KDYLNKDKDG VTTSRRYSYC  60
KEGVKRKYES DVMPKRTRVA TKIGCGAKMV IVLFRGTMKY RVHDLVLEHN HELHIT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.21e-13FAR1 family protein