PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027096284.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family NAC
Protein Properties Length: 130aa    MW: 14632.8 Da    PI: 10.1577
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027096284.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM45.13.2e-1461242109
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykve..PwdLpk...........kvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                     p GfrF+Pt+eel+   L  k+++++ ++++++++ ++y v+  Pw++ +           +  +++++   ++ ++ ++ + ++  r++ sg+W
  XP_027096284.1   6 PLGFRFRPTEEELI-TLLWFKATNQQQHITDAVPKKKLYGVDalPWNIFAeddvrwelsddS-GKKRTKRVTYAVTKLSKISPNKVARTAGSGMW 98 
                     89************.88999999999999999*****9998666****63477888776642.223334445555555555567999*99***** PP

             NAM  84 katgkdkevlskkgelvglkktLvfy 109
                     + + k k+vl+++ge++g  k+L + 
  XP_027096284.1  99 EGQSKGKDVLNSRGETIGSIKMLSYV 124
                     ***********************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    
MVRDCPLGFR FRPTEEELIT LLWFKATNQQ QHITDAVPKK KLYGVDALPW NIFAEDDVRW  60
ELSDDSGKKR TKRVTYAVTK LSKISPNKVA RTAGSGMWEG QSKGKDVLNS RGETIGSIKM  120
LSYVLNSGSP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.19e-08NAC family protein