PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027096329.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family YABBY
Protein Properties Length: 190aa    MW: 20882.7 Da    PI: 9.6248
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027096329.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY146.82.2e-45191641163
           YABBY   1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 
                     +d++++se++Cyv+CnfCnt+lav +P + l+ +vtv+CGhC +l  +       +++            l+ +   ++ ++++  +  ++ ++s
  XP_027096329.1  19 MDLVQQSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCGNLSFL------STRPPPP---------LQGQCFEHQPTIQTFFSDLKKGQSS 98 
                     578999*************************************97442......2333333.........2222223333333333322222222 PP

           YABBY  96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163
                      ss   s++ + ++p++p v++PPek+ r Psaynrf+keeiqrika+nP+i hreafsaaaknWa +
  XP_027096329.1  99 SSS--SSTSGEPSSPKAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKATNPEIPHREAFSAAAKNWARY 164
                     222..256778899****************************************************76 PP
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    
MSSHSSSSSS LNLEDKATMD LVQQSEHLCY VRCNFCNTVL AVGIPCKRLL DTVTVKCGHC  60
GNLSFLSTRP PPPLQGQCFE HQPTIQTFFS DLKKGQSSSS SSSTSGEPSS PKAPFVVKPP  120
EKKHRLPSAY NRFMKEEIQR IKATNPEIPH REAFSAAAKN WARYIPTAPT GSIAESSNSN  180
HVRFRSGTKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.17e-65YABBY family protein