PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027096338.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 515aa MW: 55770.9 Da PI: 7.0992

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027096338.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.3	5.6e-16	156	201	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l ++v+++G+ +W++Ia+++ gR++k+c++rw++ XP_027096338.1 156 RGHWRPAEDTKLRELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 201 899***************************.*********996 PP
2	Myb_DNA-binding	56.2	7.8e-18	208	252	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r ++T+eE+e+l a++++G++ W+ Iar ++ gRt++ +k++w+ + XP_027096338.1 208 RRAFTEEEEERLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHVV 252 678*****************.*****.*********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence
MEMANKQCSI YAPNTTSSIN TGIDSYPSGA SPFLCSSSLA LSSPLSSSPP PSGSMGMIFE 60 DMSCLSISPN YLSSSRDSLH EGRPCWGFSF MPKCLLEESQ NSDVGEGKGS SDCSDGFGET 120 GNQPIDLNAD LSEEKQSNNL QAVGSRDSGQ SKLCARGHWR PAEDTKLREL VALYGPQNWN 180 LIAEKLEGRS GKSCRLRWFN QLDPRINRRA FTEEEEERLM AAHRLYGNKW AMIARLFPGR 240 TDNAVKNHWH VVMARKYREQ SSAYRRRKMG QFVCGRVEDH DRSFVSRRDA SAHIKTESTG 300 PPPHNYTLIN NSNGTLLGNL TACSSGGNLN GGVGAGGIGI ACGSNISPHM ASGGEAVLSN 360 IVPSRHTGFC SSQQTSCDIF PGNCSNGMMS IFKQGRPWDR PRDESNVSYL CHHPVQQQIH 420 HPLLMTAMQQ SQHCQYHHPP STSTSSLSSV DYYHNTSTGG GGGGGGGSIS IPPQVSSLLT 480 TTTDPASSPL TEDRITSQYE TLSPPFIDFL GVGAT

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence

MEMANKQCSI YAPNTTSSIN TGIDSYPSGA SPFLCSSSLA LSSPLSSSPP PSGSMGMIFE  60
DMSCLSISPN YLSSSRDSLH EGRPCWGFSF MPKCLLEESQ NSDVGEGKGS SDCSDGFGET  120
GNQPIDLNAD LSEEKQSNNL QAVGSRDSGQ SKLCARGHWR PAEDTKLREL VALYGPQNWN  180
LIAEKLEGRS GKSCRLRWFN QLDPRINRRA FTEEEEERLM AAHRLYGNKW AMIARLFPGR  240
TDNAVKNHWH VVMARKYREQ SSAYRRRKMG QFVCGRVEDH DRSFVSRRDA SAHIKTESTG  300
PPPHNYTLIN NSNGTLLGNL TACSSGGNLN GGVGAGGIGI ACGSNISPHM ASGGEAVLSN  360
IVPSRHTGFC SSQQTSCDIF PGNCSNGMMS IFKQGRPWDR PRDESNVSYL CHHPVQQQIH  420
HPLLMTAMQQ SQHCQYHHPP STSTSSLSSV DYYHNTSTGG GGGGGGGSIS IPPQVSSLLT  480
TTTDPASSPL TEDRITSQYE TLSPPFIDFL GVGAT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	1e-78	MYB family protein