PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027096468.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

ARR-B

Protein Properties

Length: 584aa MW: 64062.1 Da PI: 8.5298

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027096468.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	83.4	2.4e-26	177	227	4	55
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 + W+ eLH++Fv+av++L G++kAtPk+i+elm+v+gLt+e+v+ HLQkYRl XP_027096468.1 177 VIWSIELHQQFVSAVNHL-GIDKATPKKIMELMNVPGLTRENVANHLQKYRL 227 67**************.******************************8 PP
2	Myb_DNA-binding	42.1	2e-13	179	226	4	48
S-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 W+ e+++++v av+ lG + t+k+I++ m+ g+t++++ +++qky+ XP_027096468.1 179 WSIELHQQFVSAVNHLGIDkaTPKKIMELMNvPGLTRENVANHLQKYR 226 ***********************************************7 PP
3	Response_reg	51.6	5.1e-18	11	96	25	109
EEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 25 evaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109 +v+++++++ al+ll+ek+ +D++l D+ p+mdG++ll+ e++lp+i+++ + + + + + Ga d+l Kp+ eel + XP_027096468.1 11 SVTTCSQATVALNLLREKKgfFDIVLSDVHVPDMDGFKLLELVSL-EMNLPVIMMSVDDRTSIVMKGITHGACDYLIKPIRFEELKN 96 799*************99****************87765.569*********************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 584 aa Download sequence
MMRIPVNDGK SVTTCSQATV ALNLLREKKG FFDIVLSDVH VPDMDGFKLL ELVSLEMNLP 60 VIMMSVDDRT SIVMKGITHG ACDYLIKPIR FEELKNIWQH VVWKRCNKGK ENEHLDTMED 120 YDHRKRGSDE AKYAYSFGNK GADGEPETST KKRKDAKQKD DTEIGKDDLI TSKKTPVIWS 180 IELHQQFVSA VNHLGIDKAT PKKIMELMNV PGLTRENVAN HLQKYRLYLR RLSAVVQKKG 240 GLPSSFCGGI DEPNPKVGSA GRFDVQALAA CGHIPQQTLA AFHPELGQNV VYTQPSIQFP 300 SNIPKHISQT VAADNPISGL DPWSSKNLDK MVAGDNVTGL RSQNGTSMMS TTQLQQQRQQ 360 QEPQQNLSIL PKPNYSITVQ PSHLVVPAHS SPSFQVVNSL VSANQNCSPG RSSIINYNIV 420 SPQSNIPATG IGRTADAQLK STTVLGGSSA AGSPALSACS VDANNGVAVQ VPSSALTFGP 480 SRKLPVHVPY IPVLQNSPGM PKNTDLGGGW TSILNRFTVD EIGLPVSNVN QEMMHGENNC 540 NDCFQKKSFL SWRKSTCLHH CYICIFFVVL FFIFIFGSPS GTTF

Sequence ? help Back to Top

Protein Sequence Length: 584 aa Download sequence

MMRIPVNDGK SVTTCSQATV ALNLLREKKG FFDIVLSDVH VPDMDGFKLL ELVSLEMNLP  60
VIMMSVDDRT SIVMKGITHG ACDYLIKPIR FEELKNIWQH VVWKRCNKGK ENEHLDTMED  120
YDHRKRGSDE AKYAYSFGNK GADGEPETST KKRKDAKQKD DTEIGKDDLI TSKKTPVIWS  180
IELHQQFVSA VNHLGIDKAT PKKIMELMNV PGLTRENVAN HLQKYRLYLR RLSAVVQKKG  240
GLPSSFCGGI DEPNPKVGSA GRFDVQALAA CGHIPQQTLA AFHPELGQNV VYTQPSIQFP  300
SNIPKHISQT VAADNPISGL DPWSSKNLDK MVAGDNVTGL RSQNGTSMMS TTQLQQQRQQ  360
QEPQQNLSIL PKPNYSITVQ PSHLVVPAHS SPSFQVVNSL VSANQNCSPG RSSIINYNIV  420
SPQSNIPATG IGRTADAQLK STTVLGGSSA AGSPALSACS VDANNGVAVQ VPSSALTFGP  480
SRKLPVHVPY IPVLQNSPGM PKNTDLGGGW TSILNRFTVD EIGLPVSNVN QEMMHGENNC  540
NDCFQKKSFL SWRKSTCLHH CYICIFFVVL FFIFIFGSPS GTTF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	2e-92	ARR-B family protein