PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027096627.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MIKC_MADS

Protein Properties

Length: 239aa MW: 27407.2 Da PI: 8.3142

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027096627.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98.6	2.5e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELS+LCdaeva+i+fs++gklye++s XP_027096627.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIVFSNRGKLYEFCS 59 79***********************************************96 PP
2	K-box	93.1	4.6e-31	80	173	7	100
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++++++ + +qe+ kLk+++e Lq++qRhllGedL +L k+L qLe+qL+ sl++iRs+K++++l+q+++lq+kek+l e nkaLr+klee XP_027096627.1 80 MNQSSKDPQGDYQEYLKLKAKVEVLQQSQRHLLGEDLAQLGAKQLDQLERQLDASLRQIRSTKTQHMLDQLSDLQQKEKSLMEVNKALRNKLEE 173 4577888999*********************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSILCD AEVALIVFSN RGKLYEFCSS 60 SSMSKTLERY HRCSYADAGM NQSSKDPQGD YQEYLKLKAK VEVLQQSQRH LLGEDLAQLG 120 AKQLDQLERQ LDASLRQIRS TKTQHMLDQL SDLQQKEKSL MEVNKALRNK LEETTAAFQL 180 SWDVSEEHNL RHRSQTIHPE GFFQPLECNS SIMNYNMVVA DAEAEPTQNP SGILPGWML

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03710.1	2e-97	MIKC_MADS family protein