PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027096635.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MIKC_MADS

Protein Properties

Length: 172aa MW: 19778.7 Da PI: 10.1061

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027096635.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.4	1.4e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELS+LCdaeva+i+fs++gklye++s XP_027096635.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIVFSNRGKLYEFCS 59 79***********************************************96 PP
2	K-box	94.6	1.6e-31	80	171	7	98
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++++++ + +qe+ kLk+++e Lq++qRhllGedL +L k+L qLe+qL+ sl++iRs+K++++l+q+++lq+kek+l e nkaLr+k+ XP_027096635.1 80 MNQSSKDPQGDYQEYLKLKAKVEVLQQSQRHLLGEDLAQLGAKQLDQLERQLDASLRQIRSTKTQHMLDQLSDLQQKEKSLMEVNKALRNKV 171 4577888999********************************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSILCD AEVALIVFSN RGKLYEFCSS 60 SSMSKTLERY HRCSYADAGM NQSSKDPQGD YQEYLKLKAK VEVLQQSQRH LLGEDLAQLG 120 AKQLDQLERQ LDASLRQIRS TKTQHMLDQL SDLQQKEKSL MEVNKALRNK VA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03710.3	6e-88	MIKC_MADS family protein