PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027096636.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MIKC_MADS
Protein Properties Length: 242aa    MW: 28225.2 Da    PI: 7.9707
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027096636.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.42.8e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gkl+eyss
  XP_027096636.1  9 KRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSS 59
                    79***********************************************96 PP
2K-box103.82.2e-348417410100
           K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     + + +  ++ e++kLk+++e Lqr++Rh++GedL+ +s k+Lq+Le+qL+++lk+iR++Kn+l++e+i+elq+kek++q++n +L kk++e
  XP_027096636.1  84 DLESEGDWTLEYTKLKAKMELLQRNHRHYMGEDLDAMSSKDLQNLEHQLDTALKQIRTRKNQLMYESISELQRKEKAIQQQNSMLAKKIKE 174
                     45556789********************************************************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    
MGRGKVQLKR IENKINRQVT FSKRRAGLLK KAHEISVLCD AEVALIVFSH KGKLFEYSSD  60
SSMENILERY ERYSYAERRL VANDLESEGD WTLEYTKLKA KMELLQRNHR HYMGEDLDAM  120
SSKDLQNLEH QLDTALKQIR TRKNQLMYES ISELQRKEKA IQQQNSMLAK KIKEKEKLMA  180
QQAQWEQQNQ GPSSTPYLIP EPLPPCINVS GNYEEETQEA RRNELELTLD SLFPCHLGCF  240
TA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-105MIKC_MADS family protein