PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027096683.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB
Protein Properties Length: 319aa    MW: 36074.2 Da    PI: 7.1264
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027096683.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.7e-172673148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll+++++  G g+W++ a++ g++Rt+k+c++rw++yl
   XP_027096683.1 26 RGPWTLEEDNLLIHYITCNGEGRWNSLAKCAGLKRTGKSCRLRWLNYL 73
                     89********************************************97 PP
2Myb_DNA-binding53.17.1e-1779122146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++l+++++ ++G++ W++Iar+++ gRt++++k++w++
   XP_027096683.1  79 RGNLTPQEQLLILELHSKWGNR-WSKIARHLP-GRTDNEIKNYWRT 122
                      7999******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    
MSKGRITTKS TSNPNEEEGS SIDLRRGPWT LEEDNLLIHY ITCNGEGRWN SLAKCAGLKR  60
TGKSCRLRWL NYLKPDIRRG NLTPQEQLLI LELHSKWGNR WSKIARHLPG RTDNEIKNYW  120
RTRVQKQARQ LNVDSNSKKF LEAIKCFWMP RLLEKMEQSS SLSSSSSISS ISTPDNHNSA  180
SPSLATNKTP LASSSPLADS KKCSSDSVRI MLLQQPAAQT QENPNSSPVQ TYGKNNSACN  240
NSIEGDSCYH VDMTSYPDGE IFSHYQPPEM SAEAMESPDM NFSECQISEA DNWFNDDMSA  300
GAFWNTDELW HFRKPEVGI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.11e-89MYB family protein