PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027096709.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB
Protein Properties Length: 215aa    MW: 24086.8 Da    PI: 6.6462
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027096709.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-161360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+++Ed+ l d++k++G g+W+ I++  g+ R++k+c++rw +yl
   XP_027096709.1 13 KGSWSPQEDQELMDYIKKHGEGHWRNIPKATGLLRCGKSCRLRWVNYL 60
                     799*****************************99************97 PP
2Myb_DNA-binding51.52.2e-1666111148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
   XP_027096709.1  66 RGNFAEDEEDLIIRLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSHL 111
                      8999******************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    
MRKPCCDKEG MNKGSWSPQE DQELMDYIKK HGEGHWRNIP KATGLLRCGK SCRLRWVNYL  60
RPDLKRGNFA EDEEDLIIRL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH LSKKLASVGI  120
DPKHHRLSHH LARNLINSIA TGETSSALEH HQPFPLDHDQ IKSSSASDHY QASDAGDGIN  180
DDDDSSSLLP DLNVDMASDS SLPSGTATED KMSLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.12e-70MYB family protein