PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027096722.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MIKC_MADS

Protein Properties

Length: 246aa MW: 28106 Da PI: 9.2764

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027096722.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.8	1.1e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s XP_027096722.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP
2	K-box	97	2.9e-32	94	180	14	100
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + s+qqe+ kLk+++e Lqr+qR+llGedL++L+ keL++Le+qL+ slk+iRs++++++l+q+ +lq+ke++l+e+nk+L+++l+e XP_027096722.1 94 ELSSQQEYLKLKARYEALQRSQRNLLGEDLGPLNSKELESLERQLDMSLKQIRSTRTQVMLDQLTDLQRKEHALNEANKTLKQRLME 180 5689*******************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS 60 SRVTLYSMLK TLERYQKCNY GAPEPNISTR EALELSSQQE YLKLKARYEA LQRSQRNLLG 120 EDLGPLNSKE LESLERQLDM SLKQIRSTRT QVMLDQLTDL QRKEHALNEA NKTLKQRLME 180 GNQVNLQWNP NAQDVGYGRQ PAHAQGDGFF HPLDCEPTLQ IGYQNDPITV AAAGPSVNNY 240 MAGWLP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24260.1	1e-128	MIKC_MADS family protein