PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027097321.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Dof

Protein Properties

Length: 480aa MW: 52322.1 Da PI: 7.925

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027097321.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.9	1e-38	119	178	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk++ XP_027097321.1 119 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGSGRRKNKNT 178 7899*****************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence
MSELKDPEIK LFGKTISLPQ NTSVSSSVHA DHPDDRQSSS NTAASEDKKN TLGEELAENK 60 QEDDLSNPTA EELTERASIS GISDDHKTSS AENETLSPKN TNEELGDNNS SQEKTLKKPD 120 KILPCPRCNS MDTKFCYYNN YNVNQPRHFC KNCQRYWTAG GTMRNVPVGS GRRKNKNTCP 180 SSYRHIMVSD ALQAARGDGA NGLHLPALKA NGTVLTFGSE RPLCESMATV LNLAERPRNH 240 LPNGFHVPEQ RFSIPCGVRE IAKDRSTGSS STISNSTEKG GSVESVSNNC QGYIQAVPPF 300 SGPPWPYPWN SAQWRSPLPP PALSSPGFPI SFYPAPPFWG CAAPTPWNLP WLSPAPSSPD 360 HSALSATPTS PTLGKHTRNG NVLSPTNLLK EEETFDRKNA EGSILIPKTL RIDDPNEAAK 420 SSIWSTLGIK NEKSESINRG SLFKAFPSKG DPKNRVADTS LVLQANPAAF SRSQSFREST

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence

MSELKDPEIK LFGKTISLPQ NTSVSSSVHA DHPDDRQSSS NTAASEDKKN TLGEELAENK  60
QEDDLSNPTA EELTERASIS GISDDHKTSS AENETLSPKN TNEELGDNNS SQEKTLKKPD  120
KILPCPRCNS MDTKFCYYNN YNVNQPRHFC KNCQRYWTAG GTMRNVPVGS GRRKNKNTCP  180
SSYRHIMVSD ALQAARGDGA NGLHLPALKA NGTVLTFGSE RPLCESMATV LNLAERPRNH  240
LPNGFHVPEQ RFSIPCGVRE IAKDRSTGSS STISNSTEKG GSVESVSNNC QGYIQAVPPF  300
SGPPWPYPWN SAQWRSPLPP PALSSPGFPI SFYPAPPFWG CAAPTPWNLP WLSPAPSSPD  360
HSALSATPTS PTLGKHTRNG NVLSPTNLLK EEETFDRKNA EGSILIPKTL RIDDPNEAAK  420
SSIWSTLGIK NEKSESINRG SLFKAFPSKG DPKNRVADTS LVLQANPAAF SRSQSFREST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.1	8e-90	Dof family protein