PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027097544.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family HB-other
Protein Properties Length: 295aa    MW: 34047.1 Da    PI: 5.0999
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027097544.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.34.6e-172878656
                    S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    + +++ +++LeelF++n+ ps+eer eL + lgL  +++++WFqN+R k k
  XP_027097544.1 28 RTSRQVVQQLEELFKNNPRPSEEERNELGEGLGLGPKRITTWFQNKRSKTK 78
                    5678889******************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
MDSVSRGNGS DDEVLPNDTQ KRKNHNNRTS RQVVQQLEEL FKNNPRPSEE ERNELGEGLG  60
LGPKRITTWF QNKRSKTKIQ TARAENVVLR EENERIQLEN AMIRERLRNT ICPACESLTI  120
EQQNQKQLVL QQLLVENAQL REEVKDKNCT STIFDNLNYI CYLVSSSAST LELYILIDES  180
FFSFYDSTKE GMDFANSGDG SHDEASVDTG KKEQLQNERE ENDALTLENE KLRMENLIMR  240
GMLMDPYCTK CHGGLTEEET RKLHLQGLAN ENAKLKKELD EKVRFLAYLH NKRGI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.11e-14HD-ZIP family protein