PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027097765.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HD-ZIP

Protein Properties

Length: 323aa MW: 36535.2 Da PI: 4.6569

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027097765.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.9	8.6e-19	87	140	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe +++++ e++ +LAk l+L+ rqV +WFqNrRa++k XP_027097765.1 87 KKRRLTAEQVQFLERSFELENKLDPERKVQLAKDLSLQPRQVAIWFQNRRARYK 140 56789************************************************9 PP
2	HD-ZIP_I/II	127.7	4.9e-41	86	178	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl++eqv++LE+sFe e+kL+perKv+la++L lqprqva+WFqnrRAR+ktkqlEk+y+ Lk++yd+l+++ ++L ke+e+L++e+++ XP_027097765.1 86 EKKRRLTAEQVQFLERSFELENKLDPERKVQLAKDLSLQPRQVAIWFQNRRARYKTKQLEKEYDCLKSSYDKLRADYDTLFKENESLKNEVHS 178 69**************************************************************************************99975 PP

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence
MEGCGGNITG TSSVLLQNER LPCSSHEALD SLWISNSSPP PFHGSTSMVK FGDARGENTR 60 EKTFFAQSDK GYDGSESYDN CFHQPEKKRR LTAEQVQFLE RSFELENKLD PERKVQLAKD 120 LSLQPRQVAI WFQNRRARYK TKQLEKEYDC LKSSYDKLRA DYDTLFKENE SLKNEVHSLA 180 EKLVQRERGK AKSEPLDSST ISPLNAEPQK ANPIALSPNV PEMPVSVKQE DASSAKSDVF 240 DSDSSHCTDG NHSSLMVPDD SSHVFEPELS DFSQDEDDSL SRSLLQPTGF PPKLEYECYN 300 DLQCNSGNLG FSIEDQSTWF WAY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	143	RRARYKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	3e-45	HD-ZIP family protein